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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
17
ChIP-seq
15
total RNA-seq
10
ATAC-seq
2
Capture-C
1
RNA microarray
Assay category
113
Transcription
17
DNA binding
10
DNA accessibility
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
control
Date released
667
February, 2021
361
August, 2017
335
November, 2017
October, 2019
273
May, 2020
210
June, 2019
168
July, 2018
163
May, 2021
143
August, 2021
105
July, 2019
103
February, 2023
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
49
April, 2018
47
October, 2018
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
19
October, 2017
10
December, 2019
8
January, 2018
6
November, 2020
5
September, 2017
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
113
tsv
41
bam
31
bigWig
26
bed narrowPeak
16
tagAlign
3
bed bed3+
Organism
142
Homo sapiens
Biosample type
99
tissue
31
in vitro differentiated cells
10
cell line
3
primary cell
Organ
92
heart
8
embryo
6
blood vessel
6
vasculature
5
epithelium
3
liver
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
Project
143
AMP
Genome assembly (visualization)
41
GRCh38
40
hg19
Lab
143
AMP-T2D consortium
128
Katalin Susztak, Upenn
32
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
month_released!
October, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
143 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
RNA microarray
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 9 more…
in vitro differentiated cells
neural progenitor cell
14
7
10
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
3
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