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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
153
total RNA-seq
149
ATAC-seq
102
single cell RNA-seq
27
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
257
Transcription
255
DNA binding
184
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
73
September, 2018
59
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
October, 2019
31
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
580
bigWig
578
bam
274
bed narrowPeak
262
tsv
240
fastq
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
Organism
730
Homo sapiens
Biosample type
2455
tissue
730
primary cell
632
cell line
386
in vitro differentiated cells
10
stem cell
Organ
221
epithelium
194
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
525
AMP
204
T1D
1
ITG
Genome assembly (visualization)
599
hg19
504
GRCh38
Lab
490
AMP-T2D consortium
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
April, 2019
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
730 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
10
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