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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
64
ChIP-seq
Assay category
199
DNA accessibility
64
DNA binding
Target of assay
47
transcription factor
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
51
November, 2017
15
August, 2017
9
November, 2018
October, 2019
1
November, 2020
Available data
3086
bam
2866
bigWig
1559
tsv
1534
bed narrowPeak
1302
fastq
941
bigBed narrowPeak
338
tagAlign
300
bed broadPeak
263
bigBed broadPeak
255
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
263
Homo sapiens
Biosample type
172
tissue
45
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
50
liver
38
brain
33
musculature of body
32
limb
30
heart
18
epithelium
18
ureter
11
vasculature
9
connective tissue
7
blood vessel
6
pancreas
4
eye
2
adipose tissue
2
artery
1
spleen
Project
263
AMP
Genome assembly (visualization)
249
GRCh38
240
hg19
Lab
263
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
February, 2020
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
263 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
45
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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