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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
DNase-seq
77
ChIP-seq
Assay category
198
DNA accessibility
77
DNA binding
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
15
August, 2017
October, 2019
8
November, 2018
1
November, 2020
Available data
3118
bam
2906
bigWig
1574
bed narrowPeak
1558
tsv
1334
fastq
959
bigBed narrowPeak
349
tagAlign
312
bed broadPeak
275
bigBed broadPeak
264
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
275
Homo sapiens
Biosample type
171
tissue
58
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
38
brain
33
musculature of body
32
limb
30
heart
18
epithelium
18
ureter
11
vasculature
9
connective tissue
7
blood vessel
6
pancreas
4
eye
2
adipose tissue
2
artery
spleen
Project
275
AMP
Genome assembly (visualization)
259
GRCh38
252
hg19
Lab
275
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
February, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
275 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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