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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
7
ATAC-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
40
DNA accessibility
27
DNA binding
4
3D chromatin structure
3
DNA methylation
Target of assay
12
histone
12
histone modification
9
control
8
broad histone mark
6
transcription factor
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
February, 2020
1
March, 2020
1
October, 2017
Available data
70
bam
58
bed narrowPeak
55
bigWig
51
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
24
fastq
3
bed bedMethyl
3
bigBed bedMethyl
1
tsv
Organism
75
Homo sapiens
Biosample type
75
tissue
Organ
927
pancreas
783
liver
678
connective tissue
489
epithelium
488
adipose tissue
382
heart
324
kidney
188
brain
186
vasculature
180
blood vessel
159
bone element
113
artery
94
musculature of body
69
blood
69
bodily fluid
50
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
75
AMP
Genome assembly (visualization)
60
GRCh38
58
hg19
Lab
75
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
February, 2020
BIOSAMPLE
ASSAY
75 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
spleen
1
20
1
2
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
distal epiphysis of femur
1
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