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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
78
ChIP-seq
2
ATAC-seq
Assay category
201
DNA accessibility
78
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
60
November, 2017
19
August, 2017
9
November, 2018
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2819
bam
2587
bigWig
1559
tsv
1258
bed narrowPeak
1240
fastq
768
bigBed narrowPeak
279
bed broadPeak
262
bigBed broadPeak
253
bed bed3+
202
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
277
Homo sapiens
Biosample type
189
tissue
50
cell line
39
primary cell
1
in vitro differentiated cells
Organ
78
kidney
55
liver
43
brain
38
musculature of body
32
limb
30
heart
18
epithelium
18
ureter
12
pancreas
11
vasculature
10
connective tissue
7
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
279
AMP
Genome assembly (visualization)
255
hg19
254
GRCh38
Lab
277
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
month_released!
October, 2019
February, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
279 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
50
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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