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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
ATAC-seq
202
DNase-seq
78
snATAC-seq
2
FAIRE-seq
Assay category
1643
Transcription
1586
DNA binding
709
DNA accessibility
70
DNA methylation
18
3D chromatin structure
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
August, 2021
49
February, 2021
34
May, 2021
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
394
bed narrowPeak
356
bam
326
bigWig
227
bigBed narrowPeak
202
bed bed3+
201
bed broadPeak
199
bigBed broadPeak
102
fastq
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
708
Homo sapiens
Biosample type
372
tissue
281
primary cell
29
cell line
27
in vitro differentiated cells
Organ
169
pancreas
116
epithelium
89
kidney
73
heart
50
vasculature
48
blood vessel
45
artery
38
limb
35
musculature of body
34
brain
31
eye
29
connective tissue
28
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
2
spleen
Project
573
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
416
hg19
347
GRCh38
Lab
511
AMP-T2D consortium
97
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
11
Katalin Susztak, Upenn
10
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
29
audit script error
1
inconsistent replicate
month_released!
October, 2019
July, 2019
August, 2021
BIOSAMPLE
ASSAY
709 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
55
1
7
1
coronary artery
35
2
kidney
11
13
liver
20
2
heart
18
+ See 56 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 55 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
in vitro differentiated cells
adipocyte
5
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 3 more…
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