Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
60
total RNA-seq
43
ATAC-seq
30
DNase-seq
3
pCHi-C
2
Hi-C
Assay category
153
Transcription
129
DNA binding
73
DNA accessibility
2
3D chromatin structure
Target of assay
92
histone
92
histone modification
54
broad histone mark
38
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
July, 2019
21
May, 2019
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
196
bigWig
183
bam
182
bed narrowPeak
155
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
2
bedpe bed3+
2
hic
Organism
360
Homo sapiens
Biosample type
285
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
922
pancreas
774
liver
658
connective tissue
478
adipose tissue
476
epithelium
360
heart
313
kidney
182
brain
177
vasculature
172
blood vessel
159
bone element
112
artery
86
musculature of body
69
blood
69
bodily fluid
48
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
360
AMP
Genome assembly (visualization)
238
GRCh38
163
hg19
Lab
320
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
month_released!
October, 2019
July, 2019
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
360 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
heart left ventricle
35
18
1
3
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
35
2
heart right ventricle
13
17
1
1
1
1
heart
9
1
18
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
Download