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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
3
pCHi-C
Assay category
13
3D chromatin structure
Date released
11
March, 2020
October, 2019
2
August, 2021
2
November, 2019
1
August, 2018
Available data
2500
bam
2309
bigWig
1347
bed narrowPeak
1269
tsv
949
fastq
874
bigBed narrowPeak
268
bed broadPeak
249
tagAlign
231
bigBed broadPeak
230
bed bed3+
161
txt
64
xls
16
bedpe bed3+
14
hic
12
bed bedMethyl
12
bigBed bedMethyl
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
vcf
Organism
16
Homo sapiens
Biosample type
9
tissue
5
in vitro differentiated cells
primary cell
2
cell line
Organ
4
pancreas
2
heart
2
liver
2
musculature of body
1
adipose tissue
1
blood vessel
1
connective tissue
1
epithelium
1
vasculature
Project
16
AMP
Genome assembly (visualization)
14
hg19
Lab
14
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
month_released!
October, 2019
July, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
16 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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