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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
32
DNase-seq
12
total RNA-seq
2
ATAC-seq
2
pCHi-C
Assay category
134
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
110
histone
110
histone modification
67
broad histone mark
43
narrow histone mark
21
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
October, 2019
30
June, 2019
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
147
bam
130
bigWig
127
bed narrowPeak
126
bigBed narrowPeak
80
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
14
tsv
1
bed bed3
Organism
182
Homo sapiens
Biosample type
168
tissue
14
primary cell
Organ
922
pancreas
774
liver
662
connective tissue
478
adipose tissue
476
epithelium
360
heart
313
kidney
182
brain
177
vasculature
172
blood vessel
159
bone element
112
artery
86
musculature of body
69
blood
69
bodily fluid
48
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
182
AMP
Genome assembly (visualization)
127
GRCh38
69
hg19
Lab
182
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
October, 2019
July, 2019
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
15
14
1
layer of hippocampus
22
caudate nucleus
15
1
1
substantia nigra
15
1
temporal lobe
15
+ See 21 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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