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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
1
pCHi-C
Assay category
7
3D chromatin structure
Date released
March, 2020
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
Available data
3126
bam
2942
bigWig
1625
bed narrowPeak
1539
tsv
1358
fastq
972
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
265
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
12
bed bed3
9
hic
8
bedpe bed3+
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
1
bedpe
1
vcf
Organism
8
Homo sapiens
Biosample type
3
primary cell
2
cell line
2
tissue
1
in vitro differentiated cells
Organ
6
pancreas
4
epithelium
1
adipose tissue
1
connective tissue
1
liver
Project
5
AMP
3
HPAP
Genome assembly (visualization)
6
hg19
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
month_released!
October, 2019
March, 2020
award.project!
KPMP
BIOSAMPLE
ASSAY
8 results
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Hi-C
pCHi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
tissue
islet of Langerhans
2
in vitro differentiated cells
white fat cell
1
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