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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
119
DNA binding
23
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
98
histone
98
histone modification
63
broad histone mark
35
narrow histone mark
24
control
Date released
October, 2019
79
November, 2017
28
May, 2019
18
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
160
bam
146
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
153
Homo sapiens
Biosample type
143
tissue
10
primary cell
Organ
804
pancreas
681
liver
670
connective tissue
487
adipose tissue
391
epithelium
355
heart
246
kidney
178
vasculature
176
blood vessel
159
bone element
153
brain
113
artery
69
blood
69
bodily fluid
48
musculature of body
37
embryo
36
eye
24
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
153
AMP
Genome assembly (visualization)
93
GRCh38
49
hg19
Lab
153
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
month_released!
October, 2019
May, 2022
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
22
temporal lobe
15
1
1
caudate nucleus
14
1
substantia nigra
14
1
brain
12
1
1
+ See 16 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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