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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
83
ChIP-seq
28
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
97
Transcription
83
DNA binding
28
DNA accessibility
1
3D chromatin structure
Target of assay
57
transcription factor
14
control
13
histone
13
histone modification
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
6
broad histone mark
3
nucleotide modification
Date released
94
February, 2021
October, 2019
27
December, 2018
21
May, 2021
18
January, 2019
16
November, 2019
15
November, 2018
13
August, 2021
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
187
bam
170
bigWig
100
tsv
81
bed narrowPeak
60
fastq
54
bigBed narrowPeak
8
tagAlign
1
bedpe bed3+
1
hic
1
txt
Organism
227
Homo sapiens
Biosample type
2180
tissue
968
primary cell
371
in vitro differentiated cells
231
cell line
10
stem cell
Organ
liver
77
epithelium
77
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
8
embryo
4
kidney
1
mammary gland
Project
220
AMP
9
T1D
2
community
Genome assembly (visualization)
180
hg19
176
GRCh38
Lab
215
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
79
inconsistent ontology term
1
inconsistent control
month_released!
October, 2019
September, 2018
organ_slims!
liver
BIOSAMPLE
ASSAY
231 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
33
15
19
6
3
2
2
1
1
smooth muscle cell of the coronary artery
52
6
8
GM12878
60
1
H1-hESC
8
EndoC-BH1
1
1
HEK293T
2
early embryonic cell
2
iPSC derived cell line
2
MCF-7
1
MIN6
1
RCC 7860 VHL
1
RCC 7860 vector
1
Synthesized DNA
1
fibroblast cell line
1
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