Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
252
ChIP-seq
243
total RNA-seq
198
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
432
Transcription
279
DNA accessibility
252
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
215
histone
215
histone modification
110
broad histone mark
105
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
27
July, 2019
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
581
bigWig
571
bam
406
fastq
270
bed narrowPeak
266
tsv
153
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1044
Homo sapiens
Biosample type
2388
tissue
1044
primary cell
566
cell line
386
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
515
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
593
hg19
508
GRCh38
Lab
480
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
1044 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 86 more…
See all biosamples
Download