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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
14
3D chromatin structure
Date released
9
March, 2020
October, 2019
2
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
Available data
2857
bam
2646
bigWig
1458
bed narrowPeak
1431
tsv
1101
fastq
910
bigBed narrowPeak
342
tagAlign
295
bed broadPeak
258
bigBed broadPeak
246
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
14
Homo sapiens
Biosample type
10
tissue
2
in vitro differentiated cells
1
cell line
1
primary cell
Organ
7
pancreas
epithelium
2
blood vessel
2
heart
2
liver
2
musculature of body
2
vasculature
1
kidney
1
vein
Project
13
AMP
1
ITG
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
10
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
month_released!
October, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
14 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
primary cell
chondrocytes
1
See all biosamples
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