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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1374
ChIP-seq
1258
total RNA-seq
311
ATAC-seq
176
single cell RNA-seq
175
DNase-seq
87
RNA microarray
35
pCHi-C
28
WGBS
28
snATAC-seq
20
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
175
DNA accessibility
Date released
163
June, 2019
9
November, 2018
October, 2019
3
August, 2017
Available data
174
bam
174
bed narrowPeak
174
bigBed narrowPeak
174
bigWig
173
bed broadPeak
173
bigBed broadPeak
172
bed bed3+
11
fastq
Organism
175
Homo sapiens
Biosample type
174
tissue
primary cell
1
in vitro differentiated cells
Organ
68
kidney
32
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
4
liver
3
blood vessel
3
connective tissue
3
eye
3
vasculature
2
adipose tissue
2
artery
1
spleen
Project
175
AMP
Genome assembly (visualization)
174
GRCh38
158
hg19
Lab
175
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
organ_slims!
mammary gland
biosample_type!
primary cell
BIOSAMPLE
ASSAY
175 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
in vitro differentiated cells
adipocyte
1
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