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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
112
ChIP-seq
1
ATAC-seq
Assay category
177
DNA accessibility
112
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
164
June, 2019
70
November, 2017
41
August, 2017
9
November, 2018
October, 2019
4
October, 2017
1
November, 2020
Available data
2809
bigWig
2791
bam
1409
bed narrowPeak
1386
tsv
1008
fastq
893
bigBed narrowPeak
289
bed broadPeak
253
bigBed broadPeak
242
bed bed3+
198
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
18
bedpe bed3+
18
hic
12
bed bed3
7
bed bedgraph
4
hdf5
4
txt
3
cool
3
tar
2
ibed
1
bedpe
Organism
283
Homo sapiens
Biosample type
192
tissue
58
cell line
38
primary cell
1
in vitro differentiated cells
Organ
71
kidney
63
liver
46
musculature of body
37
brain
32
limb
27
heart
18
ureter
17
pancreas
12
epithelium
10
vasculature
9
connective tissue
6
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
289
AMP
Genome assembly (visualization)
289
hg19
275
GRCh38
Lab
288
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
October, 2019
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
289 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
brain
14
3
muscle of arm
17
heart
16
kidney
13
muscle of leg
13
+ See 33 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
cardiac fibroblast
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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