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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
100
ChIP-seq
Assay category
193
DNA accessibility
100
DNA binding
Target of assay
51
histone
51
histone modification
49
transcription factor
26
broad histone mark
25
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
70
November, 2017
29
August, 2017
October, 2019
7
November, 2018
3
October, 2017
1
November, 2020
Available data
2467
bam
2347
bigWig
1421
bed narrowPeak
1166
tsv
888
bigBed narrowPeak
887
fastq
330
tagAlign
293
bed broadPeak
270
bigBed broadPeak
238
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
13
bedpe bed3+
12
bed bed3
12
hic
8
csv
7
bed bedgraph
4
hdf5
3
tar
2
ibed
1
vcf
Organism
293
Homo sapiens
Biosample type
189
tissue
58
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
32
limb
30
heart
pancreas
18
epithelium
18
ureter
11
vasculature
10
connective tissue
7
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
293
AMP
Genome assembly (visualization)
272
hg19
262
GRCh38
Lab
293
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
organ_slims!
mammary gland
pancreas
BIOSAMPLE
ASSAY
293 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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