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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
63
ChIP-seq
2
ATAC-seq
Assay category
201
DNA accessibility
63
DNA binding
Target of assay
63
histone
63
histone modification
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
39
August, 2017
23
November, 2017
9
November, 2018
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2664
bam
2473
bigWig
1583
tsv
1166
bed narrowPeak
904
fastq
567
bigBed narrowPeak
340
tagAlign
264
bed broadPeak
246
bed bed3+
227
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
vcf
Organism
258
Homo sapiens
Biosample type
209
tissue
40
primary cell
14
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
44
brain
32
limb
30
heart
20
pancreas
19
liver
18
ureter
16
epithelium
10
connective tissue
9
vasculature
6
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
264
AMP
Genome assembly (visualization)
240
hg19
239
GRCh38
Lab
262
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
October, 2019
organ_slims!
mammary gland
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
264 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
11
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 17 more…
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
See all biosamples
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