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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
6
DNA accessibility
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
October, 2019
Available data
439
bam
422
bigWig
401
tsv
41
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
482
Homo sapiens
Biosample type
480
tissue
2
primary cell
1
in vitro differentiated cells
Organ
794
pancreas
777
liver
655
connective tissue
483
adipose tissue
370
heart
347
epithelium
311
kidney
197
brain
185
vasculature
181
blood vessel
115
artery
81
musculature of body
75
bone element
69
blood
69
bodily fluid
51
limb
39
eye
31
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
vein
Project
483
AMP
Genome assembly (visualization)
424
hg19
421
GRCh38
Lab
483
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2019
audit.ERROR.category!
inconsistent ontology term
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
2
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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