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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
73
ChIP-seq
6
WGBS
4
ATAC-seq
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
73
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
October, 2019
Available data
439
bam
422
bigWig
399
tsv
43
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
485
Homo sapiens
Biosample type
486
tissue
2
primary cell
1
in vitro differentiated cells
Organ
544
connective tissue
502
pancreas
486
adipose tissue
355
liver
305
heart
295
kidney
178
brain
107
blood vessel
107
vasculature
81
musculature of body
74
bone element
52
limb
47
artery
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
Project
486
AMP
Genome assembly (visualization)
422
hg19
421
GRCh38
Lab
486
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
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