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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
19
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
1
pCHi-C
Assay category
398
Transcription
19
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
17
August, 2017
12
July, 2019
5
October, 2018
1
August, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
October, 2019
Available data
442
bam
424
bigWig
401
tsv
44
fastq
13
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
425
Homo sapiens
Biosample type
422
tissue
2
primary cell
1
in vitro differentiated cells
Organ
622
pancreas
618
liver
568
connective tissue
425
adipose tissue
281
epithelium
219
heart
146
brain
121
vasculature
116
blood vessel
109
kidney
70
musculature of body
64
artery
58
bone element
55
blood
55
bodily fluid
39
limb
29
embryo
18
ureter
16
spleen
6
eye
1
pericardium
1
vein
Project
425
AMP
Genome assembly (visualization)
422
GRCh38
422
hg19
Lab
425
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
October, 2019
BIOSAMPLE
ASSAY
425 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
adipose tissue
381
1
1
2
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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