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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
56
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
56
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
45
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
October, 2019
Available data
425
bam
407
bigWig
401
tsv
27
fastq
8
bed narrowPeak
8
tagAlign
4
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
472
Homo sapiens
Biosample type
470
tissue
2
primary cell
1
in vitro differentiated cells
Organ
909
pancreas
640
connective tissue
480
epithelium
473
adipose tissue
446
liver
368
heart
321
kidney
197
brain
180
vasculature
175
blood vessel
159
bone element
110
artery
96
musculature of body
53
limb
39
eye
34
embryo
20
lung
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
473
AMP
Genome assembly (visualization)
408
hg19
407
GRCh38
Lab
473
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
organ_slims!
spleen
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
473 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
2
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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