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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
73
ChIP-seq
17
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
Assay category
463
Transcription
73
DNA binding
19
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
536
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
October, 2019
Available data
508
bam
482
bigWig
459
tsv
88
txt
44
fastq
21
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
648
Homo sapiens
Biosample type
645
tissue
3
primary cell
1
in vitro differentiated cells
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
648
AMP
1
T1D
Genome assembly (visualization)
495
hg19
490
GRCh38
Lab
648
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2019
organ_slims!
ureter
BIOSAMPLE
ASSAY
649 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
tissue
adipose tissue
382
2
2
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
12
1
1
+ See 16 more…
primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
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