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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
401
total RNA-seq
80
ChIP-seq
34
DNase-seq
11
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
404
Transcription
80
DNA binding
45
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
38
histone
38
histone modification
25
control
24
broad histone mark
17
transcription factor
14
narrow histone mark
5
RNA binding protein
Date released
392
February, 2021
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
488
bam
463
bigWig
404
tsv
57
bed narrowPeak
47
bigBed narrowPeak
44
fastq
38
bed bed3+
35
bed broadPeak
34
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
542
Homo sapiens
Biosample type
540
tissue
2
primary cell
1
in vitro differentiated cells
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
543
AMP
Genome assembly (visualization)
469
hg19
468
GRCh38
Lab
543
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2019
BIOSAMPLE
ASSAY
543 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
muscle of leg
7
13
1
omental fat pad
5
11
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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