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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
15
total RNA-seq
7
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
1
small RNA-seq
Assay category
57
DNA binding
20
Transcription
9
DNA accessibility
Target of assay
33
histone
33
histone modification
23
transcription factor
16
broad histone mark
16
narrow histone mark
5
RNA binding protein
2
chromatin remodeller
1
control
Date released
49
August, 2017
14
June, 2019
6
February, 2021
6
July, 2019
6
November, 2020
2
April, 2018
2
July, 2018
1
May, 2021
Available data
86
bam
84
bigWig
60
bed narrowPeak
52
fastq
20
tsv
16
bigBed narrowPeak
13
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
1
bed bed3
Organism
86
Homo sapiens
Biosample type
tissue
54
in vitro differentiated cells
32
primary cell
Organ
292
liver
271
epithelium
241
pancreas
86
connective tissue
75
heart
74
vasculature
70
blood vessel
66
artery
54
blood
54
bodily fluid
29
embryo
20
kidney
14
brain
11
musculature of body
3
eye
2
adipose tissue
1
pericardium
Project
86
AMP
Genome assembly (visualization)
105
hg19
86
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
October, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
in vitro differentiated cells
adipocyte
48
4
1
cardiac fibroblast
1
primary cell
osteoblast
5
1
2
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
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