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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
3
WGBS
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
65
DNA binding
4
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
39
transcription factor
26
histone
26
histone modification
control
13
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
65
August, 2017
5
October, 2018
2
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
1
October, 2017
Available data
567
bigWig
565
bam
478
tsv
76
fastq
75
bed narrowPeak
26
bed bed3+
25
bigBed narrowPeak
19
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
76
Homo sapiens
Biosample type
49
in vitro differentiated cells
24
tissue
3
primary cell
Organ
441
pancreas
388
liver
240
epithelium
76
connective tissue
54
blood
54
bodily fluid
25
adipose tissue
20
embryo
16
brain
16
spleen
4
vasculature
2
blood vessel
2
musculature of body
Project
76
AMP
Genome assembly (visualization)
74
GRCh38
72
hg19
Lab
76
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
October, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
47
1
white fat cell
1
tissue
white adipose tissue
12
omental fat pad
3
1
1
adipose tissue
1
3
subcutaneous adipose tissue
2
1
primary cell
pancreatic stellate cell
3
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