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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
21
DNA binding
14
Transcription
Target of assay
11
histone
11
histone modification
7
control
7
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
13
February, 2018
12
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
Available data
35
bam
29
bigWig
26
fastq
14
bed narrowPeak
14
tsv
3
bed bed3+
Organism
36
Homo sapiens
Biosample type
28
in vitro differentiated cells
8
cell line
Organ
874
pancreas
771
liver
663
connective tissue
478
adipose tissue
468
epithelium
385
heart
324
kidney
196
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
36
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
36
AMP
Genome assembly (visualization)
29
GRCh38
29
hg19
1
hg18
Lab
36
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
October, 2019
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
36 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
17
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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