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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
1
GRO-seq
1
pCHi-C
Assay category
22
DNA binding
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
9
February, 2018
October, 2019
1
January, 2018
1
March, 2020
Available data
23
fastq
22
bam
15
bigWig
14
bed narrowPeak
3
bed bed3+
1
tsv
Organism
24
Homo sapiens
Biosample type
23
in vitro differentiated cells
1
tissue
Organ
592
liver
449
pancreas
291
epithelium
221
heart
205
kidney
199
connective tissue
177
brain
122
vasculature
116
blood vessel
97
bone element
89
adipose tissue
87
musculature of body
69
blood
69
bodily fluid
57
artery
50
limb
35
eye
25
spleen
23
embryo
18
ureter
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
24
AMP
Genome assembly (visualization)
15
GRCh38
15
hg19
1
hg18
Lab
24
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
October, 2019
assay_slims!
Transcription
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
ovary
1
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