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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
15
total RNA-seq
1
GRO-seq
Assay category
22
DNA binding
15
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
February, 2020
1
January, 2018
Available data
36
bam
29
bigWig
27
fastq
15
tsv
14
bed narrowPeak
3
bed bed3+
Organism
38
Homo sapiens
Biosample type
29
in vitro differentiated cells
8
cell line
1
tissue
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
38
AMP
Genome assembly (visualization)
29
GRCh38
29
hg19
1
hg18
Lab
38
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
tibial nerve
1
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