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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
31
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
119
Transcription
82
DNA accessibility
31
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
130
August, 2021
47
September, 2023
October, 2019
23
April, 2019
14
May, 2023
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
3
June, 2019
2
March, 2020
Available data
167
bed narrowPeak
116
bam
109
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
246
Homo sapiens
Biosample type
227
tissue
15
primary cell
4
cell line
Organ
922
pancreas
721
liver
671
connective tissue
488
adipose tissue
471
epithelium
315
heart
246
kidney
178
vasculature
176
blood vessel
162
brain
159
bone element
113
artery
69
blood
69
bodily fluid
63
musculature of body
37
embryo
36
eye
24
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
199
AMP
47
KPMP
Genome assembly (visualization)
105
GRCh38
36
hg19
Lab
142
Katalin Susztak, Upenn
55
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
7
audit script error
month_released!
October, 2019
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
246 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
64
49
23
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
kidney epithelial cell
1
5
1
epithelial cell of proximal tubule
1
3
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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