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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
54
total RNA-seq
11
ATAC-seq
7
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
1
small RNA-seq
Assay category
119
Transcription
17
DNA accessibility
7
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
66
August, 2021
47
September, 2023
14
May, 2023
October, 2019
10
July, 2019
8
February, 2021
5
April, 2019
3
December, 2019
2
March, 2020
1
June, 2019
1
May, 2019
Available data
bed narrowPeak
116
bam
109
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
157
Homo sapiens
Biosample type
144
tissue
9
primary cell
4
cell line
Organ
721
pancreas
605
connective tissue
477
adipose tissue
359
epithelium
343
liver
199
heart
157
kidney
151
bone element
90
vasculature
88
blood vessel
72
brain
62
artery
36
musculature of body
23
embryo
20
lung
15
blood
15
bodily fluid
11
spleen
9
limb
8
skeleton
7
eye
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
110
AMP
47
KPMP
Genome assembly (visualization)
17
GRCh38
11
hg19
Lab
78
Katalin Susztak, Upenn
47
KPMP
30
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
5
inconsistent ontology term
month_released!
October, 2019
files.file_type!
bigBed broadPeak
bed narrowPeak
BIOSAMPLE
ASSAY
157 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
small RNA-seq
tissue
kidney
64
49
11
5
6
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
epithelial cell of proximal tubule
1
1
1
kidney epithelial cell
1
1
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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