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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
28
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
119
Transcription
82
DNA accessibility
28
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
6
control
3
RNA binding protein
transcription factor
Date released
130
August, 2021
47
September, 2023
October, 2019
22
April, 2019
14
May, 2023
11
July, 2019
8
February, 2021
4
May, 2019
3
December, 2019
2
June, 2019
2
March, 2020
Available data
165
bed narrowPeak
113
bam
107
bigWig
101
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
243
Homo sapiens
Biosample type
226
tissue
13
primary cell
4
cell line
Organ
903
pancreas
631
connective tissue
471
adipose tissue
464
epithelium
427
liver
338
heart
243
kidney
171
vasculature
169
blood vessel
162
brain
159
bone element
108
artery
63
musculature of body
35
eye
34
embryo
21
limb
20
lung
18
blood
18
bodily fluid
18
spleen
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
196
AMP
47
KPMP
Genome assembly (visualization)
103
GRCh38
34
hg19
Lab
142
Katalin Susztak, Upenn
52
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
7
audit script error
7
inconsistent ontology term
month_released!
October, 2019
files.file_type!
bigBed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
243 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
64
49
22
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
kidney epithelial cell
1
4
1
epithelial cell of proximal tubule
1
2
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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