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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
31
ChIP-seq
5
total RNA-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
pCHi-C
1
small RNA-seq
Assay category
DNA accessibility
62
Transcription
31
DNA binding
4
DNA methylation
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
August, 2021
47
September, 2023
October, 2019
23
April, 2019
10
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
3
June, 2019
3
May, 2023
2
March, 2020
Available data
37
bam
30
bigWig
24
bed narrowPeak
24
bigBed narrowPeak
18
tsv
5
csv
5
txt
4
bed bedMethyl
4
bigBed bedMethyl
Organism
104
Homo sapiens
Biosample type
87
tissue
15
primary cell
2
cell line
Organ
755
pancreas
721
liver
646
connective tissue
482
adipose tissue
367
epithelium
216
heart
164
brain
147
bone element
131
vasculature
127
blood vessel
104
kidney
67
artery
61
musculature of body
60
blood
60
bodily fluid
29
embryo
23
spleen
15
limb
10
lung
9
eye
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
57
AMP
47
KPMP
Genome assembly (visualization)
34
hg19
30
GRCh38
Lab
54
AMP-T2D consortium
47
KPMP
3
Katalin Susztak, Upenn
Audit category:
9
inconsistent ontology term
7
audit script error
month_released!
October, 2019
August, 2021
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
104 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
RRBS
snDrop-seq
RNA microarray
pCHi-C
small RNA-seq
tissue
kidney
56
23
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
kidney epithelial cell
5
1
1
epithelial cell of proximal tubule
3
1
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
RCC 7860 VHL
1
RCC 7860 vector
1
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