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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
64
ATAC-seq
24
ChIP-seq
1
FAIRE-seq
Assay category
143
DNA accessibility
24
DNA binding
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
80
June, 2019
64
August, 2021
18
April, 2019
October, 2019
4
May, 2019
1
July, 2019
Available data
167
bed narrowPeak
116
bam
109
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
167
Homo sapiens
Biosample type
151
tissue
16
primary cell
Organ
435
liver
207
pancreas
186
heart
167
kidney
130
epithelium
128
brain
99
vasculature
95
blood vessel
75
connective tissue
60
musculature of body
blood
54
bodily fluid
53
artery
44
limb
33
eye
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
Project
167
AMP
Genome assembly (visualization)
166
GRCh38
96
hg19
Lab
103
AMP-T2D consortium
64
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
month_released!
October, 2019
organ_slims!
blood
BIOSAMPLE
ASSAY
167 results
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DNase-seq
ATAC-seq
ChIP-seq
FAIRE-seq
tissue
kidney
13
64
18
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
primary cell
kidney epithelial cell
1
4
epithelial cell of proximal tubule
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
glomerular endothelial cell
1
+ See 3 more…
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