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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
Assay category
38
DNA accessibility
7
DNA binding
4
3D chromatin structure
3
Transcription
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
45
bam
44
bed narrowPeak
38
bigBed narrowPeak
38
bigWig
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
3
tsv
Organism
52
Homo sapiens
Biosample type
52
tissue
Organ
875
pancreas
777
liver
673
connective tissue
484
adipose tissue
436
epithelium
335
heart
320
kidney
198
brain
186
vasculature
181
blood vessel
159
bone element
115
artery
90
musculature of body
69
blood
69
bodily fluid
52
limb
39
eye
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
52
AMP
Genome assembly (visualization)
44
hg19
43
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
52 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
muscle of leg
13
7
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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