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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
ChIP-seq
158
total RNA-seq
5
DNase-seq
3
small RNA-seq
2
ATAC-seq
1
WGBS
Assay category
355
DNA binding
161
Transcription
7
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
65
histone modification
64
histone
51
RNA binding protein
39
narrow histone mark
25
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
162
May, 2020
52
November, 2018
50
December, 2017
19
August, 2017
7
July, 2019
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
524
bam
522
bigWig
361
bed narrowPeak
343
fastq
326
bigBed narrowPeak
161
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
524
Homo sapiens
Biosample type
268
cell line
232
tissue
14
in vitro differentiated cells
10
primary cell
Organ
627
pancreas
566
connective tissue
524
liver
424
adipose tissue
271
epithelium
219
heart
183
kidney
158
vasculature
154
blood vessel
139
brain
107
artery
66
bone element
54
blood
54
bodily fluid
53
musculature of body
44
limb
29
embryo
18
ureter
16
spleen
8
skeleton
6
eye
1
pericardium
Project
524
AMP
Genome assembly (visualization)
618
hg19
524
GRCh38
Lab
524
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
month_released!
October, 2019
BIOSAMPLE
ASSAY
524 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
ATAC-seq
WGBS
cell line
HepG2
261
5
1
1
tissue
liver
70
146
2
1
right lobe of liver
7
2
1
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
hepatic stellate cell
1
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