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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
9
snATAC-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
32
DNA binding
11
DNA accessibility
6
3D chromatin structure
5
DNA methylation
3
Transcription
Target of assay
20
histone
20
histone modification
12
broad histone mark
12
control
8
narrow histone mark
Date released
26
August, 2017
8
January, 2021
5
July, 2019
3
January, 2019
3
March, 2020
3
November, 2018
2
February, 2020
2
January, 2018
2
June, 2019
2
May, 2019
2
May, 2022
Available data
16
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
10
bam
8
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
58
Homo sapiens
Biosample type
40
tissue
11
primary cell
7
cell line
Organ
301
pancreas
260
liver
218
epithelium
141
kidney
126
heart
114
connective tissue
93
bone element
66
adipose tissue
61
brain
43
musculature of body
34
eye
31
vasculature
29
blood vessel
20
lung
15
blood
15
bodily fluid
9
limb
9
spleen
8
artery
8
embryo
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
50
AMP
8
T1D
Genome assembly (visualization)
128
hg19
GRCh38
Lab
50
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
October, 2019
assembly!
GRCh38
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
snATAC-seq
Hi-C
RRBS
ATAC-seq
total RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
2
left ventricle myocardium
1
primary cell
peripheral blood mononuclear cell
8
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
cell line
GM12878
6
1
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