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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
87
Homo sapiens
Biosample type
75
tissue
12
primary cell
Organ
611
liver
511
pancreas
336
epithelium
306
kidney
219
heart
202
connective tissue
175
brain
121
vasculature
115
blood vessel
101
bone element
89
adipose tissue
87
musculature of body
69
blood
69
bodily fluid
57
artery
50
limb
35
eye
24
spleen
23
embryo
19
lung
18
ureter
16
skeleton
1
bone marrow
1
pericardium
thymus
1
vein
Project
87
AMP
Genome assembly (visualization)
67
hg19
47
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
October, 2019
organ_slims!
thymus
files.file_type!
tsv
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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