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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
20
DNA binding
12
DNA accessibility
9
Transcription
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
19
April, 2020
9
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
1
October, 2017
Available data
24
bam
24
fastq
16
bigWig
14
bed narrowPeak
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
44
Homo sapiens
Biosample type
45
tissue
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
345
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
26
AMP
19
LungMap
Genome assembly (visualization)
16
GRCh38
14
hg19
Lab
26
AMP-T2D consortium
19
Xin Sun, UCSD
month_released!
October, 2019
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
pCHi-C
ATAC-seq
DNase-seq
tissue
spleen
20
2
1
1
1
lung
10
9
1
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