Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
989
total RNA-seq
705
ChIP-seq
224
ATAC-seq
180
single cell RNA-seq
174
DNase-seq
86
RNA microarray
27
WGBS
27
snATAC-seq
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1185
Transcription
705
DNA binding
429
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
454
histone modification
453
histone
260
broad histone mark
193
narrow histone mark
159
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
277
August, 2017
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
May, 2022
26
November, 2018
25
February, 2020
23
October, 2017
18
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1714
bam
1586
bigWig
1068
tsv
807
bed narrowPeak
508
bigBed narrowPeak
370
fastq
203
bed broadPeak
201
bed bed3+
182
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2486
Homo sapiens
Biosample type
2486
tissue
1054
primary cell
628
cell line
386
in vitro differentiated cells
8
stem cell
Organ
544
connective tissue
495
pancreas
486
adipose tissue
315
liver
305
heart
295
kidney
179
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
25
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2390
AMP
47
KPMP
31
T1D
18
LungMap
Genome assembly (visualization)
1692
GRCh38
1566
hg19
Lab
2175
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
18
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
October, 2019
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
2486 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
278
50
55
6
1
7
3
1
1
4
adipose tissue
382
2
2
3
1
liver
146
140
1
2
3
1
1
1
1
kidney
49
23
75
64
13
6
1
1
1
bone element
84
+ See 111 more…
See all biosamples
Download