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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1013
total RNA-seq
250
ChIP-seq
208
ATAC-seq
172
DNase-seq
172
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1201
Transcription
412
DNA accessibility
250
DNA binding
38
DNA methylation
15
3D chromatin structure
Target of assay
458
histone modification
histone
264
broad histone mark
193
narrow histone mark
158
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
227
August, 2021
166
May, 2020
161
August, 2017
161
June, 2019
120
July, 2018
76
July, 2019
66
May, 2022
October, 2019
60
February, 2023
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
23
February, 2020
23
May, 2019
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1395
bam
1232
bigWig
1064
tsv
420
bed narrowPeak
304
fastq
241
bigBed narrowPeak
187
bed bed3+
172
bed broadPeak
170
bigBed broadPeak
157
txt
64
xls
43
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2028
Homo sapiens
Biosample type
2031
tissue
836
primary cell
535
cell line
274
in vitro differentiated cells
8
stem cell
Organ
513
connective tissue
455
adipose tissue
429
pancreas
291
liver
277
kidney
215
heart
158
bone element
72
brain
71
blood vessel
71
vasculature
57
musculature of body
47
limb
artery
35
eye
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1936
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1313
GRCh38
1298
hg19
Lab
1714
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
month_released!
October, 2019
target.investigated_as!
histone
organ_slims!
artery
BIOSAMPLE
ASSAY
2031 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
2
3
1
islet of Langerhans
284
20
55
1
7
3
1
1
4
liver
166
81
20
2
1
3
1
1
1
1
kidney
49
5
75
13
64
6
1
1
1
bone element
84
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