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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
250
ChIP-seq
244
ATAC-seq
174
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1205
Transcription
450
DNA accessibility
250
DNA binding
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
histone
264
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
161
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
25
February, 2020
23
November, 2018
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1398
bam
1233
bigWig
1068
tsv
456
bed narrowPeak
301
fastq
241
bigBed narrowPeak
189
bed bed3+
174
bed broadPeak
172
bigBed broadPeak
157
txt
64
xls
43
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2070
Homo sapiens
Biosample type
2073
tissue
838
primary cell
599
cell line
274
in vitro differentiated cells
8
stem cell
Organ
513
connective tissue
455
adipose tissue
429
pancreas
291
liver
277
kidney
215
heart
158
bone element
72
brain
71
blood vessel
71
vasculature
57
musculature of body
47
limb
45
artery
35
eye
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1978
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1349
GRCh38
1299
hg19
Lab
1756
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
month_released!
October, 2019
target.investigated_as!
histone
other post-translational modification
BIOSAMPLE
ASSAY
2073 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
2
3
1
islet of Langerhans
284
20
55
1
7
3
1
1
4
liver
166
81
20
2
1
3
1
1
1
1
kidney
49
5
75
13
64
6
1
1
1
bone element
84
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