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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
10
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
10
DNA binding
Target of assay
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
December, 2017
7
February, 2018
2
May, 2021
1
January, 2018
Available data
24
bam
18
bigWig
15
fastq
14
tsv
3
bed narrowPeak
1
bed bed3+
Organism
25
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
cell line
Organ
784
pancreas
687
liver
603
connective tissue
458
adipose tissue
417
epithelium
302
kidney
288
heart
159
bone element
151
vasculature
146
blood vessel
113
artery
90
brain
68
blood
68
bodily fluid
63
musculature of body
47
limb
39
eye
25
embryo
20
lung
19
spleen
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
25
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
month_released!
October, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
25 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
8
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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