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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
347
ChIP-seq
158
total RNA-seq
22
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
347
DNA binding
161
Transcription
27
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
329
transcription factor
78
histone modification
78
recombinant protein
histone
55
RNA binding protein
50
narrow histone mark
27
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
251
November, 2017
143
May, 2020
49
November, 2018
33
December, 2017
20
May, 2022
12
August, 2021
9
July, 2019
8
August, 2017
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
October, 2019
Available data
534
bigWig
504
bam
356
bed narrowPeak
346
fastq
319
bigBed narrowPeak
161
tsv
49
bed broadPeak
49
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
1
tagAlign
Organism
541
Homo sapiens
Biosample type
312
cell line
218
tissue
9
primary cell
2
in vitro differentiated cells
Organ
551
connective tissue
541
liver
514
pancreas
423
adipose tissue
212
epithelium
123
heart
90
vasculature
85
blood vessel
85
kidney
70
artery
70
bone element
54
blood
54
bodily fluid
46
brain
46
musculature of body
38
limb
33
eye
18
embryo
18
ureter
12
skeleton
8
spleen
2
pericardium
1
vein
Project
541
AMP
Genome assembly (visualization)
541
hg19
460
GRCh38
Lab
509
AMP-T2D consortium
20
Karen Mohlke, UNC
12
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
541 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
cell line
HepG2
304
5
1
1
1
tissue
liver
39
146
20
2
1
1
1
right lobe of liver
2
2
1
1
2
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
2
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