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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
48
ChIP-seq
2
ATAC-seq
Assay category
201
DNA accessibility
48
DNA binding
Target of assay
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
187
June, 2019
46
November, 2017
9
November, 2018
October, 2019
4
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2526
bam
2258
bigWig
1584
tsv
1124
fastq
940
bed narrowPeak
634
bigBed narrowPeak
249
bed broadPeak
247
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
68
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
249
Homo sapiens
Biosample type
174
tissue
43
cell line
31
primary cell
1
in vitro differentiated cells
Organ
78
kidney
48
liver
35
brain
33
musculature of body
32
limb
30
heart
18
ureter
16
epithelium
9
connective tissue
9
vasculature
8
pancreas
6
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
249
AMP
Genome assembly (visualization)
234
GRCh38
225
hg19
Lab
247
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
October, 2019
target.investigated_as!
histone
other post-translational modification
BIOSAMPLE
ASSAY
249 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
43
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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