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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
1
ChIP-seq
1
WGBS
Assay category
38
DNA accessibility
4
3D chromatin structure
3
Transcription
1
DNA binding
1
DNA methylation
Target of assay
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
32
June, 2019
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
May, 2019
Available data
40
bam
38
bed narrowPeak
33
bigWig
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
32
bigBed narrowPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
47
Homo sapiens
Biosample type
47
tissue
Organ
784
pancreas
685
liver
603
connective tissue
458
adipose tissue
417
epithelium
302
kidney
293
heart
159
bone element
151
vasculature
146
blood vessel
113
artery
90
brain
68
blood
68
bodily fluid
63
musculature of body
47
limb
39
eye
25
embryo
20
lung
18
ureter
16
skeleton
16
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
47
AMP
Genome assembly (visualization)
39
GRCh38
38
hg19
Lab
47
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
target.investigated_as!
histone
other post-translational modification
BIOSAMPLE
ASSAY
47 results
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DNase-seq
ATAC-seq
Hi-C
total RNA-seq
ChIP-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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