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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
116
total RNA-seq
88
ChIP-seq
74
snATAC-seq
49
ATAC-seq
47
WGBS
17
pCHi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
123
DNA accessibility
120
Transcription
88
DNA binding
47
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
101
May, 2022
February, 2023
45
May, 2020
33
February, 2021
19
September, 2020
16
January, 2021
10
April, 2020
7
August, 2020
7
March, 2020
5
March, 2023
October, 2022
Available data
196
bigWig
186
bam
104
tsv
101
zippedFastqFolder
88
bed narrowPeak
84
tagAlign
59
fastq
1
hic
Organism
391
Homo sapiens
Biosample type
365
primary cell
23
tissue
6
cell line
2
stem cell
Organ
128
pancreas
116
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
221
T1D
160
HPAP
10
LungMap
4
community
1
ITG
Genome assembly (visualization)
197
GRCh38
186
hg19
Lab
213
Kyle Gaulton, UCSD
160
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
9
inconsistent ontology term
month_released!
October, 2022
February, 2023
award.project!
AMP
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
396 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
15
29
31
Langerhans cell
48
pancreatic beta cell
1
16
16
peripheral blood mononuclear cell
8
+ See 36 more…
tissue
lung
10
islet of Langerhans
2
2
4
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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