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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
97
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
STARR-seq
2
Capture-C
2
DNase-seq
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
104
DNA binding
99
Transcription
30
DNA accessibility
2
3D chromatin structure
Target of assay
64
transcription factor
23
control
18
histone
18
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
8
narrow histone mark
7
recombinant protein
3
nucleotide modification
Date released
94
February, 2021
30
October, 2019
27
December, 2018
20
May, 2021
18
January, 2019
16
November, 2019
15
November, 2018
13
August, 2021
8
March, 2020
6
November, 2020
2
March, 2023
1
February, 2023
1
January, 2018
October, 2022
Available data
212
bam
186
bigWig
102
tsv
94
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
248
Homo sapiens
Biosample type
2385
tissue
867
primary cell
379
in vitro differentiated cells
251
cell line
10
stem cell
Organ
liver
88
pancreas
75
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
249
AMP
T1D
2
community
Genome assembly (visualization)
196
hg19
192
GRCh38
Lab
240
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
88
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
month_released!
October, 2022
award.project!
T1D
organ_slims!
liver
BIOSAMPLE
ASSAY
251 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Capture-C
DNase-seq
Hi-C
CRISPR genome editing followed by sgRNA sequencing
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
13
31
19
6
2
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
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