Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ATAC-seq
204
ChIP-seq
174
single cell RNA-seq
139
total RNA-seq
87
RNA microarray
35
pCHi-C
28
snATAC-seq
20
Hi-C
11
RRBS
10
MeRIP-seq
10
WGBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNase-seq
1
GRO-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
317
Transcription
244
DNA accessibility
204
DNA binding
21
DNA methylation
20
3D chromatin structure
1
DNA sequencing
Target of assay
165
histone
165
histone modification
83
narrow histone mark
82
broad histone mark
27
control
17
transcription factor
6
RNA binding protein
5
nucleotide modification
Date released
265
August, 2021
114
August, 2017
101
February, 2023
94
February, 2021
57
October, 2019
47
September, 2023
42
May, 2022
41
March, 2020
40
May, 2024
25
February, 2020
19
April, 2020
18
May, 2021
15
May, 2023
14
November, 2017
13
July, 2019
10
November, 2020
8
January, 2021
8
October, 2017
4
January, 2018
4
July, 2018
4
March, 2019
4
March, 2023
3
December, 2019
2
November, 2019
1
April, 2019
1
August, 2022
1
December, 2018
1
May, 2020
October, 2022
Available data
bam
2297
bigWig
1390
bed narrowPeak
1199
tsv
916
bigBed narrowPeak
808
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
211
bed bed3+
157
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
949
Homo sapiens
Biosample type
870
tissue
primary cell
in vitro differentiated cells
79
cell line
7
stem cell
Organ
205
kidney
181
heart
108
liver
105
pancreas
92
bone element
53
eye
50
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
43
epithelium
39
artery
39
brain
38
musculature of body
20
lung
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
852
AMP
47
KPMP
34
T1D
19
LungMap
4
community
Genome assembly (visualization)
157
GRCh38
128
hg19
1
hg18
Lab
580
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
33
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
118
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
October, 2022
files.file_type!
bam
biosample_type!
primary cell
in vitro differentiated cells
BIOSAMPLE
ASSAY
956 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
MeRIP-seq
WGBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNase-seq
...and 4 more
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
30
41
26
4
7
3
1
4
bone element
84
liver
20
23
1
20
1
1
1
3
left cardiac atrium
40
18
+ See 71 more…
cell line
HepG2
19
9
2
2
2
EndoC_BH1
18
1
6
3
2
2
1
EndoC-BH1
HEK293T
2
GM12878
1
+ See 6 more…
stem cell
SB Ad3.1
1
1
hESC
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
See all biosamples
Download